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gcc/4.7.2: fatal error: cstdlib: No such file or directory
I am working with a code that has mostly been developed in C++. There are a few C files too. I’m quite new to programming; this is an engineering code.
I have been using it successfully for months on a Mac, compiled with g++. Now I need to compile it using gcc/4.7.2 and Linux. I am getting this error:
factor.c:35:19: fatal error: cstdlib: No such file or directory
The file, «factor» is one of the few C files I mentioned. It does contain:
I tried changing it to the «C» version. That didn’t work. My understanding is that «cstdlib» should be included by default with the compiler, but I can’t find it. Does anyone know how to do a thorough search?
I don’t have root privileges on this machine, so I probably can’t install it.
I’m stuck and if anyone has any advice, I would be very grateful.
it would be in /usr/include/. i could understand it…. cant believe i didnt see this before…
factor.c:35:19: fatal error: cstdlib: No such file or directory
you cant have a c->c++ (ie x.h -> cx) in a .c file
Thanks very much, DTSCode.
When you say that I can’t have c->c++ (ie x.h -> cx) in a .c file, what do you mean? For example, in the C file, should I have:
(the C++ version)
Or should I have the C version?
the c version. so if you are writing code in a .c file you cant have a cx file. x is a place holder for any one the c headers. so for example:
(c++ can use either c can only use the first column)
c header c++ equivalent
———— ——————-
stdio.h cstdio
ctypes.h cctypes
string.h cstring
stdlib.h cstdlib
math.h cmath
time.h ctime
Thanks a lot. So I should be using:
It is weird that it isn’t working. I did check usr/include and it doesn’t look like anything is there. This is a cluster, so maybe the setup is different.
Do you know if it is possible to get it from anywhere else and simply install it in my own directory?
stdlib.h not stdlib. c requires the use of .h headers while c++ uses .h, .hpp, or precompiled (ie the suffix is ommitted)
Thanks very much. I’ll give that a try. It takes about 40 minutes to compile.
Hey if you’re still there, DTSCode, it did work!! I needed to add an include path to my makefile to
That way, I was able to access «stdlib.h».
Your advice about needing to say <cFile.h> and not <cFile> has been a huge help. Thank you so much. I don’t know if I can give you some kind of credit (like marking this answer right) for your help; if I can, I’d be happy to. Just let me know!
Last edited on
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Im trying to compile the very simple c++ Program
//Programm, um Celcius in Fahrenheit umzurechnen
// F=C*(212-32)/100+32
#include <cstdio>
#include <csdtlib>
#include <iostream>
using namespace std;
int main(int numberofArgs, char*pszArgs[])
{
//Temperatur in C eingeben
int celcius;
cout<<"Geben Sie die Temperatur in Celcius ein: ";
cin>>celcius;
//Umrechnungsfaktor Berechnen
int factor;
factor=(212-32)/100;
//Umrechnen
int fahrenheit;
fahrenheit=celcius*factor-32;
//Ergebnis und Zeilenumbruch ausgeben
cout<<"entspricht in Fahrenheit: ";
cout<<fahrenheit<<endl;
//Warte bis Benutzer Ergebnis gelesen hat und Programm beendet
system("PAUSE");
return 0;
}
after typing
g++ TestConversion.cpp -o conversion
in the terminal, it returns
TestConversion.cpp:4:19: fatal error: csdtlib: No such file or directory
compilation terminated.
in my system, cstdlib can be found in
/usr/include/c++/5
and in
/usr/include/c++/5.4.0
(5 and 5.4.0 are the only directories contained in /usr/include/c++)
therefore i have also tried
g++ -I /usr/include/c++/5 TestConversion.cpp -o conversion
and
g++ -I /usr/include/c++/5.4.0 TestConversion.cpp -o conversion
which leads to the same result as above. I also tried
g++ -I /usr/include/c++/5.4.0/cstdlib TestConversion.cpp -o conversion
which probably makes no sense, since the result was
cc1plus: warning: /usr/include/c++/5.4.0/cstdlib: not a directory
TestConversion.cpp:4:19: fatal error: csdtlib: No such file or directory
compilation terminated
(with the sme happening if 5.4.0 is replaced by 5).
I also installed clang to check if i could compile the program with it, but i had the same problem. The command
clang TestConversion.cpp -o conversion
produced
TestConversion.cpp:4:10: fatal error: 'csdtlib' file not found
#include <csdtlib>
^
1 error generated.
I have already re-installed g++ and multilib.
I am using ubuntu 16.04 and have, as it may have become obvious, very little experience with programming and gcc/g++.
Any help would be greatly appreciated. I’ll gladly provide any further details if they’re useful.
Here’s the command being executed (you might want to brace yourselves)…
Code: Select all
/usr/bin/arm-none-eabi-g++ -DLIB_PICO_BIT_OPS=1 -DLIB_PICO_BIT_OPS_PICO=1 -DLIB_PICO_DIVIDER=1 -DLIB_PICO_DIVIDER_HARDWARE=1 -DLIB_PICO_DOUBLE=1 -DLIB_PICO_DOUBLE_PICO=1 -DLIB_PICO_FLOAT=1 -DLIB_PICO_FLOAT_PICO=1 -DLIB_PICO_INT64_OPS=1 -DLIB_PICO_INT64_OPS_PICO=1 -DLIB_PICO_MALLOC=1 -DLIB_PICO_MEM_OPS=1 -DLIB_PICO_MEM_OPS_PICO=1 -DLIB_PICO_PLATFORM=1 -DLIB_PICO_PRINTF=1 -DLIB_PICO_PRINTF_PICO=1 -DLIB_PICO_RUNTIME=1 -DLIB_PICO_STANDARD_LINK=1 -DLIB_PICO_STDIO=1 -DLIB_PICO_STDIO_UART=1 -DLIB_PICO_STDLIB=1 -DLIB_PICO_SYNC=1 -DLIB_PICO_SYNC_CORE=1 -DLIB_PICO_SYNC_CRITICAL_SECTION=1 -DLIB_PICO_SYNC_MUTEX=1 -DLIB_PICO_SYNC_SEM=1 -DLIB_PICO_TIME=1 -DLIB_PICO_UTIL=1 -DPICO_BOARD="pico" -DPICO_BUILD=1 -DPICO_CMAKE_BUILD_TYPE="Release" -DPICO_COPY_TO_RAM=0 -DPICO_CXX_ENABLE_EXCEPTIONS=0 -DPICO_NO_FLASH=0 -DPICO_NO_HARDWARE=0 -DPICO_ON_DEVICE=1 -DPICO_PROGRAM_URL="https://github.com/raspberrypi/pico-examples/tree/HEAD/blink" -DPICO_TARGET_NAME="blink" -DPICO_USE_BLOCKED_RAM=0 -I/home/dg/src/pico/pico-sdk/src/common/pico_stdlib/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_gpio/include -I/home/dg/src/pico/pico-sdk/src/common/pico_base/include -I/home/dg/src/pico/pico-examples/generated/pico_base -I/home/dg/src/pico/pico-sdk/src/boards/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_platform/include -I/home/dg/src/pico/pico-sdk/src/rp2040/hardware_regs/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_base/include -I/home/dg/src/pico/pico-sdk/src/rp2040/hardware_structs/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_claim/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_sync/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_uart/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_divider/include -I/home/dg/src/pico/pico-sdk/src/common/pico_time/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_timer/include -I/home/dg/src/pico/pico-sdk/src/common/pico_sync/include -I/home/dg/src/pico/pico-sdk/src/common/pico_util/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_runtime/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_clocks/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_irq/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_resets/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_pll/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_vreg/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_watchdog/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/hardware_xosc/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_printf/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_bootrom/include -I/home/dg/src/pico/pico-sdk/src/common/pico_bit_ops/include -I/home/dg/src/pico/pico-sdk/src/common/pico_divider/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_double/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_int64_ops/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_float/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_malloc/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/boot_stage2/include -I/home/dg/src/pico/pico-sdk/src/common/pico_binary_info/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_stdio/include -I/home/dg/src/pico/pico-sdk/src/rp2_common/pico_stdio_uart/include -mcpu=cortex-m0plus -mthumb -O3 -DNDEBUG -ffunction-sections -fdata-sections -fno-exceptions -fno-unwind-tables -fno-rtti -fno-use-cxa-atexit -std=gnu++17 -MD -MT blink/CMakeFiles/blink.dir/home/dg/src/pico/pico-sdk/src/rp2_common/pico_standard_link/new_delete.cpp.obj -MF CMakeFiles/blink.dir/home/dg/src/pico/pico-sdk/src/rp2_common/pico_standard_link/new_delete.cpp.obj.d -o CMakeFiles/blink.dir/home/dg/src/pico/pico-sdk/src/rp2_common/pico_standard_link/new_delete.cpp.obj -c /home/dg/src/pico/pico-sdk/src/rp2_common/pico_standard_link/new_delete.cpp
If I add -v to show the actual include paths I see this line:
Code: Select all
ignoring nonexistent directory "/usr/lib/gcc/arm-none-eabi/10.3.1/../../../arm-none-eabi/include/c++/10.3.1"
So it’s clearly looking for version 10.3.1 of newlib where I have 8.3.1 installed. Looking at the Debian packages themselves, I have 15:10.3-2021.07-2 of gcc-arm-none-eabi and 15:8-2019-q3-1+13 of libstdc++-arm-none-eabi-newlib, so that explains it.
That will be because I have the sid version of the compiler, but the sid version of newlib doesn’t match the compiler, and there’s no constraint to make sure that the same versions are installed. After downgrading to the 8.3.1 version of the compiler I can do a build.
This isn’t pico-sdk’s fault, then. I think it’s actually Debian’s fault, and I’ll file a bug.
Recently I switched to gcc-6 in my OS X, and faced to VARIOUS of disasterS. One of them is the gcc compile cannot find header «stdlib.h»
For detail, we can find error message as follow:
In file included from /usr/local/Cellar/gcc/6.2.0/include/c++/6.2.0/ext/string_conversions.h:41:0,
from /usr/local/Cellar/gcc/6.2.0/include/c++/6.2.0/bits/basic_string.h:5402,
from /usr/local/Cellar/gcc/6.2.0/include/c++/6.2.0/string:52,
from /Users/yu/.local/src/xgboost/dmlc-core/include/dmlc/base.h:171,
from /Users/yu/.local/src/xgboost/dmlc-core/src/recordio.cc:3:
/usr/local/Cellar/gcc/6.2.0/include/c++/6.2.0/cstdlib:75:25: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^
compilation terminated.
Thousands of similar questions can be found in google and most of them are stupid s**t. After hours’ check, this follow up gives me the answer.
Afaik new GCC 6 trips if you manually pass /usr/include in the wrong order. What happens if you remove that obvious CPLUS_INCLUDE_PATH, and check the makefile/configure script for any -I /usr/include and subsequently remove them? Not on my arch would test that myself otherwise.
This problem is from my environment settings. At first, my environment parameter CPLUS_INCLUDE_PATH written as follow:
export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/usr/include:/usr/local/include:$HOME/.local/include:/some/other/paths
This sequence is incorrect, because we can find stdlib.h in /usr/include , but that stdlib.h is not expected by gcc-6, and an fatal error comes.
To fix this problem, a fix may as follow:
export CPLUS_INCLUDE_PATH=/usr/local/Cellar/gcc/6.2.0/include/c++/6.2.0:/usr/include:/usr/local/include:$HOME/.local/include:$CPLUS_INCLUDE_PATH
And finally, it works.
PS:
How to install gcc-6 in OS X?
We shall install homebrew first, and then type:
brew install gcc --without-multilib
brew is the de facto standard of yum/dnf/apt-get on OS X. You can use parameter «—without-multilib» to obtain the support OpenMP, and it will take you quite a while (~30 min) to compile the whole gcc. You can check here and here for more details.
How to change default C/C++ compile?
You can edit your ~/.bash_profile or ~/.bashrc, create one if not exists, and then append lines as follow:
CC=/usr/local/bin/gcc-6 CXX=/usr/local/bin/g++-6
Your cmake or most of other makefiles will detect these environment parameters and use them as default C/C++ compile
Yu
Ideals are like the stars: we never reach them, but like the mariners of the sea, we chart our course by them.
This is referencing something from an example and complied fine before, but now I get errors. What happened? I don’t even know what <cstdlib> even is. I get the following errors:.piolibdepsnano_everyRF24@1.4.1examples_linuxextrascanner.cpp:26:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
.piolibdepsnano_everyRF24@1.4.1examples_linuxextrarpi-hub.cpp:30:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
srcHome.cpp:7:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
.piolibdepsnano_everyRF24@1.4.1examples_linuxinterruptsgettingstarted_call_response_int.cpp:16:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
.piolibdepsnano_everyRF24@1.4.1examples_linuxinterruptsgettingstarted_call_response_int2.cpp:16:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
.piolibdepsnano_everyRF24@1.4.1examples_linuxinterruptspingpair_dyn_int.cpp:11:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
.piolibdepsnano_everyRF24@1.4.1examples_linuxinterruptstransfer_interrupt.cpp:15:10: fatal error: cstdlib: No such file or directory
#include <cstdlib>
^~~~~~~~~
compilation terminated.
Compiling .piobuildnano_everyFrameworkArduinoUSBCore.cpp.o
Compiling .piobuildnano_everyFrameworkArduinoWInterrupts.cpp.o
Compiling .piobuildnano_everyFrameworkArduinoWMath.cpp.o
Compiling .piobuildnano_everyFrameworkArduinoabi.cpp.o
Compiling .piobuildnano_everyFrameworkArduinoapiCommon.cpp.o
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxextrascanner.cpp.o] Error 1
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxextrarpi-hub.cpp.o] Error 1
*** [.piobuildnano_everysrcHome.cpp.o] Error 1
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxinterruptsgettingstarted_call_response_int.cpp.o] Error 1
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxinterruptsgettingstarted_call_response_int2.cpp.o] Error 1
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxinterruptspingpair_dyn_int.cpp.o] Error 1
*** [.piobuildnano_everylib090RF24@1.4.1examples_linuxinterruptstransfer_interrupt.cpp.o] Error 1
Ошибка fatal error: stdlib.h: No such file or directory¶
Такая ошибка может возникнуть при компиляции программ на C++ в Linux.
В моем случае это была библиотека на Qt.
Ошибка компиляции Qt модуля¶
$ g++ -c -pipe -g -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_BLUETOOTH_LIB -DQT_CORE_LIB -I. -isystem /usr/include -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtBluetooth -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o main.o src/main.cpp In file included from /usr/include/c++/7/bits/stl_algo.h:59:0, from /usr/include/c++/7/algorithm:62, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:109, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qcoreapplication.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QCoreApplication:1, from src/main.cpp:6: /usr/include/c++/7/cstdlib:75:15: fatal error: stdlib.h: No such file or directory #include_next <stdlib.h> ^~~~~~~~~~ compilation terminated. Makefile:497: recipe for target 'main.o' failed make: *** [main.o] Error 1
Возникает только в последних версиях gcc, видимо заголовки как то не
правильно собраны в дистрибутиве Ubuntu 18.04. Поэтому для решения установим
по умолчанию компилятор gcc 5-ой версии.
Установка:
$ sudo apt install gcc-5 g++-5
Добавим его в список:
$ sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-5 50 --slave /usr/bin/g++ g++ /usr/bin/g++-5
И поменяем значение дефолтного компилятора:
$ sudo update-alternatives --config gcc There are 2 choices for the alternative gcc (providing /usr/bin/gcc). Selection Path Priority Status ------------------------------------------------------------ 0 /usr/bin/gcc-8 80 auto mode * 1 /usr/bin/gcc-5 50 manual mode 2 /usr/bin/gcc-8 80 manual mode Press <enter> to keep the current choice[*], or type selection number: 1
Теперь в системе используется по умолчанию gcc 5-ой версии и все собирается без ошибок.
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NewUser2015 3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 18:49. Показов 4118. Ответов 50 Метки нет (Все метки)
Помогите исправить ошибку prog.cpp:2:20: fatal error: сstdlib: No such file or directory
__________________
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7275 / 6220 / 2833 Регистрация: 14.04.2014 Сообщений: 26,871 |
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10.11.2015, 18:51 |
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Может буква c русская?
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 18:58 [ТС] |
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nmcf, поменял все С на англ. все равно выдает тоже самое
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7275 / 6220 / 2833 Регистрация: 14.04.2014 Сообщений: 26,871 |
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10.11.2015, 18:59 |
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Ну значит открывай Проводник и ищи этот файл. Может, у тебя его нет просто.
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 19:04 [ТС] |
5 |
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nmcf, всмысле? у меня в проводнике должен быть файл этот?
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:13 |
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NewUser2015, В прямом , тебе ПК говорит No such file or directory нет такого файла
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7275 / 6220 / 2833 Регистрация: 14.04.2014 Сообщений: 26,871 |
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10.11.2015, 19:14 |
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У тебя в компьютере он должен быть. Иначе откуда компилятор его возьмёт? Где-то в папке с компилятором ищи.
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 19:16 [ТС] |
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Mesteriis, где мне его тогда взять?
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:16 |
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с компилятором ищи. Да же лучше папка должна называться include (ну в 90% случаев так)
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 19:16 [ТС] |
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nmcf, писал с онлайн компилятора ideone http://ideone.com/FOm3LT
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:19 |
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NewUser2015, Подожди ты на чем разрабатываешь? Добавлено через 49 секунд
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7275 / 6220 / 2833 Регистрация: 14.04.2014 Сообщений: 26,871 |
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10.11.2015, 19:21 |
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Удали это название и набери снова, английскими буквами.
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:22 |
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NewUser2015, Все понял, это что то не то с этим ideone, качай нормальную среду на пк и все будет ок Добавлено через 24 секунды
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 19:23 [ТС] |
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Ошибка компиляции time: 0 memory: 0 signal:0
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:24 |
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NewUser2015, ну а именное пространство написать забыл?
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3 / 3 / 1 Регистрация: 03.11.2015 Сообщений: 61 |
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10.11.2015, 19:25 [ТС] |
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4978 / 3085 / 456 Регистрация: 10.11.2010 Сообщений: 11,164 Записей в блоге: 10 |
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10.11.2015, 19:26 |
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NewUser2015, Все понял, это что то не то с этим ideone, качай нормальную среду на пк и все будет ок У него первая буква не латинская c.
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:27 |
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castaway, Бррр очень странный сайт
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4978 / 3085 / 456 Регистрация: 10.11.2010 Сообщений: 11,164 Записей в блоге: 10 |
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10.11.2015, 19:28 |
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NewUser2015, после всех Добавлено через 11 секунд
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599 / 237 / 69 Регистрация: 08.08.2015 Сообщений: 1,637 |
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10.11.2015, 19:30 |
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NewUser2015, Ну что нет когда да, нет метода cout и cin есть std::cout и std::cin Добавлено через 1 минуту
0 |
Most cases this error happens after you updated the GNU GCC (this update triggers the error, but it might be not the problem)! This was the case with us we updated the GNU GCC and then wanted to update QT libraries and several packages were built OK, but then this error occurred when compiling dev-qt/qtgui.
x86_64-pc-linux-gnu-g++ -c -march=haswell -O2 -fomit-frame-pointer -pipe -std=c++1z -fvisibility=hidden -fvisibility-inlines-hidden -fno-exceptions -Wall -W -Wvla -Wdate-time -Wshift-overflow=2 -Wduplicated-cond -Wno-stringop-overflow -D_REENTRANT -fPIC -DQT_NO_USING_NAMESPACE -DQT_NO_FOREACH -DENABLE_PIXMAN_DRAWHELPERS -DQT_NO_NARROWING_CONVERSIONS_IN_CONNECT -DQT_BUILD_GUI_LIB -DQT_BUILDING_QT -DQT_NO_CAST_TO_ASCII -DQT_ASCII_CAST_WARNINGS -DQT_MOC_COMPAT -DQT_USE_QSTRINGBUILDER -DQT_DEPRECATED_WARNINGS -DQT_DISABLE_DEPRECATED_BEFORE=0x050000 -DQT_NO_EXCEPTIONS -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -DQT_NO_DEBUG -DQT_CORE_LIB -I. -I../../include -I../../include/QtGui -I../../include/QtGui/5.11.2 -I../../include/QtGui/5.11.2/QtGui -I.tracegen -isystem /usr/include/libdrm -isystem /usr/include -isystem /usr/include/qt5/QtCore/5.11.2 -isystem /usr/include/qt5/QtCore/5.11.2/QtCore -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -I.moc -isystem /usr/include/libpng16 -I../../mkspecs/linux-g++ -o .obj/qaccessible.o accessible/qaccessible.cpp
distcc[8024] (dcc_build_somewhere) Warning: failed to distribute, running locally instead
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/bits/stl_algo.h:59,
from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/algorithm:62,
from ../../include/QtCore/../../src/corelib/global/qglobal.h:142,
from ../../include/QtCore/qglobal.h:1,
from ../../include/QtGui/../../src/gui/kernel/qtguiglobal.h:43,
from ../../include/QtGui/qtguiglobal.h:1,
from ../../include/QtGui/../../src/gui/image/qimage.h:43,
from ../../include/QtGui/qimage.h:1,
from image/qimage_sse4.cpp:40:
/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
distcc[8012] ERROR: compile image/qimage_sse4.cpp on localhost failed
make: *** [Makefile:2414: .obj/qimage_sse4.o] Error 1
make: *** Waiting for unfinished jobs....
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/bits/stl_algo.h:59,
from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/algorithm:62,
from ../../include/QtCore/../../src/corelib/global/qglobal.h:142,
from ../../include/QtCore/qglobal.h:1,
from ../../include/QtGui/../../src/gui/kernel/qtguiglobal.h:43,
from ../../include/QtGui/qtguiglobal.h:1,
from ../../include/QtGui/5.11.2/QtGui/private/../../../../../src/gui/kernel/qtguiglobal_p.h:54,
from ../../include/QtGui/5.11.2/QtGui/private/qtguiglobal_p.h:1,
from ../../include/QtGui/5.11.2/QtGui/private/../../../../../src/gui/painting/qdrawhelper_p.h:54,
from ../../include/QtGui/5.11.2/QtGui/private/qdrawhelper_p.h:1,
from painting/qdrawhelper_sse4.cpp:40:
/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
The problem is that it cannot be true, stdlib.h cannot be missing in our installation and indeed it appears the file is there:
srv.local ~ # find /usr/lib/gcc/x86_64-pc-linux-gnu/|grep stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/include/g++-v5/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/include/g++-v7/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/include/g++-v7/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/include/g++-v7/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/include/g++-v7/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.4/include/g++-v4/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/include/g++-v6/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/include/g++-v6/stdlib.h
And you can see that there are two locations as for the last 3 major GNU GCC releases.
So the problem looks like the wrong configuration of GNU GCC – wrong include configuration or not including all directories.
After some googling we found that there was a bad version of dev-util/meson package, which generated broken pkgconfig files (.pc files in “/usr/lib64/pkgconfig/”) in some packages’ builds!
The solution is:
- Install the latest dev-util/meson
- Rebuild all the packages installed with the old one. If you do not know which one you can search them in “/usr/lib64/pkgconfig/” with:
grep "I/usr/include/B" /usr/lib64/pkgconfig/*.pc
Here is the bug filed in Gentoo: https://bugs.gentoo.org/649264#c4
So after some tests here is what worked for us:
srv.local ~ # emerge -v meson These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] x11-base/xcb-proto-1.13::gentoo ABI_X86="32 (64) (-x32)" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6 -python3_7%" 149 KiB [ebuild U ] dev-util/meson-0.48.2::gentoo [0.47.1::gentoo] PYTHON_TARGETS="python3_5 python3_6 -python3_7%" 1281 KiB [ebuild R ] x11-base/xorg-proto-2018.4::gentoo 0 KiB [ebuild R ] x11-libs/libxshmfence-1.3-r1::gentoo USE="-static-libs" ABI_X86="32 (64) (-x32)" 0 KiB .... .... .... srv.local ~ # emerge -v libxshmfence x11-base/xcb-proto x11-libs/libxcb $(qlist -IC|grep x11-libs/xcb |sort|uniq) These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] x11-libs/libxshmfence-1.3-r1::gentoo USE="-static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-base/xcb-proto-1.13::gentoo ABI_X86="32 (64) (-x32)" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6 -python3_7" 0 KiB [ebuild U ] x11-libs/libxcb-1.13.1:0/1.12::gentoo [1.13:0/1.12::gentoo] USE="(selinux) xkb -doc -static-libs -test" ABI_X86="32 (64) (-x32)" 495 KiB [ebuild R ] x11-libs/xcb-util-keysyms-0.4.0-r1::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 284 KiB [ebuild R ] x11-libs/xcb-util-renderutil-0.3.9-r2::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 287 KiB [ebuild R ] x11-libs/xcb-util-wm-0.4.1-r2::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 315 KiB [ebuild R ] x11-libs/xcb-util-0.4.0-r1::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 291 KiB [ebuild R ] x11-libs/xcb-util-image-0.4.0-r1::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 321 KiB [ebuild R ] x11-libs/xcb-util-cursor-0.1.3-r2::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 289 KiB
And after that, we were able to successfully build and install “dev-qt/qtgui”
* Bonus 1
If the problem still persists and you get the above error
the real problem (which the above package recompilation eliminates) is using GNU GCC with “-isystem” for system libraries
Unfortunately, we did not manage to solve the problem except just editing the source of QT libraries and replacing the value of variable QMAKE_CFLAGS_ISYSTEM from “-isystem” to “-I” in gcc-base.conf.
So, edit the source file and create a new ebuild or just when the file is unpacking you must edit the “/var/tmp/portage/dev-qt/qtgui-5.11.1/work/qtbase-everywhere-src-5.11.1/mkspecs/common/gcc-base.conf”:
QMAKE_CFLAGS_ISYSTEM = -I
How did we compile it successfully without creating a new package?
- copy the original file “/var/tmp/portage/dev-qt/qtgui-5.11.1/work/qtbase-everywhere-src-5.11.1/mkspecs/common/gcc-base.conf”
- edit the QMAKE_CFLAGS_ISYSTEM in the copied file
- execute “emerge -v dev-qt”
- right after emerge reports the successful unpack you must press ctrl+z to stop temporary the execution of the emerge command
- replace the orginal with the modified version in /var/tmp/portage/dev-qt/qtgui-5.11.1/work/qtbase-everywhere-src-5.11.1/mkspecs/common/gcc-base.conf
- in the same bash console execute “fg” to continue the execution of the emerge command.
Replace the qtgui-5.11.1 with the specific package and version in your case.
Of course, you may want to just continue your current build manually executing the “emerge” commands following Resume compilation of a package from where it failed under Gentoo
You should also edit the file “/usr/lib64/qt5/mkspecs/common/gcc-base.conf”, which is installed in your system! It also contains “QMAKE_CFLAGS_ISYSTEM” and it should be set to “-I” as above (only if you continue receiving the error).
* Bonus 2
In one of our system appeared that the above solution did not help. After building the above proposed packages it still got the same error (fatal error: stdlib.h: No such file or directory) building “dev-qt/qtgui”. So here what we did:
First we tried to rebuild all the dependencies of the currently installed “dev-qt/qtgui-5.11.1”
srv.local ~ # equery g =dev-qt/qtgui-5.11.1 * Searching for qtgui5.11.1 in dev-qt ... * dependency graph for dev-qt/qtgui-5.11.1 `-- dev-qt/qtgui-5.11.1 ~amd64 `-- dev-libs/glib-2.56.2 (dev-libs/glib) ~amd64 `-- dev-qt/qtcore-5.11.1-r1 (~dev-qt/qtcore-5.11.1) amd64 `-- media-libs/fontconfig-2.13.1-r2 (media-libs/fontconfig) ~amd64 `-- media-libs/freetype-2.9.1-r4 (>=media-libs/freetype-2.6.1) ~amd64 `-- media-libs/harfbuzz-2.1.3 (>=media-libs/harfbuzz-1.6.0) ~amd64 `-- sys-libs/zlib-1.2.11-r2 (>=sys-libs/zlib-1.2.5) amd64 `-- virtual/opengl-7.0-r2 (virtual/opengl) amd64 `-- dev-qt/qtdbus-5.11.1 (~dev-qt/qtdbus-5.11.1) amd64 `-- media-libs/mesa-18.3.0_rc3 (media-libs/mesa) ~amd64 [egl] `-- x11-libs/libdrm-2.4.96 (x11-libs/libdrm) amd64 `-- sys-libs/mtdev-1.1.5 (sys-libs/mtdev) amd64 `-- virtual/jpeg-0-r2 (virtual/jpeg) amd64 `-- dev-libs/libinput-1.12.3 (dev-libs/libinput) ~amd64 `-- x11-libs/libxkbcommon-0.8.2 (x11-libs/libxkbcommon) amd64 `-- media-libs/libpng-1.6.35-r1 (media-libs/libpng) ~amd64 `-- x11-libs/tslib-1.0-r3 (x11-libs/tslib) amd64 `-- dev-qt/qtnetwork-5.11.1 (~dev-qt/qtnetwork-5.11.1) amd64 `-- virtual/libudev-232 (virtual/libudev) amd64 `-- x11-libs/libICE-1.0.9-r2 (x11-libs/libICE) amd64 `-- x11-libs/libSM-1.2.3 (x11-libs/libSM) amd64 `-- x11-libs/libX11-1.6.7 (x11-libs/libX11) amd64 `-- x11-libs/libXi-1.7.9-r1 (>=x11-libs/libXi-1.7.5) amd64 `-- x11-libs/libxcb-1.13.1 (>=x11-libs/libxcb-1.10) amd64 [xkb] `-- x11-libs/xcb-util-image-0.4.0-r1 (x11-libs/xcb-util-image) amd64 `-- x11-libs/xcb-util-keysyms-0.4.0-r1 (x11-libs/xcb-util-keysyms) amd64 `-- x11-libs/xcb-util-renderutil-0.3.9-r2 (x11-libs/xcb-util-renderutil) amd64 `-- x11-libs/xcb-util-wm-0.4.1-r2 (x11-libs/xcb-util-wm) amd64 `-- sys-kernel/linux-headers-4.19 (sys-kernel/linux-headers) ~amd64 `-- dev-lang/perl-5.26.2 (dev-lang/perl) ~amd64 `-- virtual/pkgconfig-0-r1 (virtual/pkgconfig) amd64 `-- dev-qt/qttest-5.11.1 (~dev-qt/qttest-5.11.1) amd64 `-- app-i18n/ibus-1.5.19 (app-i18n/ibus) ~amd64 `-- dev-qt/qtchooser-0_p20170803 (dev-qt/qtchooser) amd64 [ dev-qt/qtgui-5.11.1 stats: packages (34), max depth (1) ] srv.local ~ # emerge -v =dev-libs/glib-2.56.2 =dev-qt/qtcore-5.11.1-r1 =media-libs/fontconfig-2.13.1-r2 =media-libs/freetype-2.9.1-r4 =media-libs/harfbuzz-2.1.3 =sys-libs/zlib-1.2.11-r2 =virtual/opengl-7.0-r2 =dev-qt/qtdbus-5.11.1 =media-libs/mesa-18.3.0_rc3 =x11-libs/libdrm-2.4.96 =sys-libs/mtdev-1.1.5 =virtual/jpeg-0-r2 =dev-libs/libinput-1.12.3 =x11-libs/libxkbcommon-0.8.2 =media-libs/libpng-1.6.35-r1 =x11-libs/tslib-1.0-r3 =dev-qt/qtnetwork-5.11.1 =virtual/libudev-232 =x11-libs/libICE-1.0.9-r2 =x11-libs/libSM-1.2.3 =x11-libs/libX11-1.6.7 =x11-libs/libXi-1.7.9-r1 =x11-libs/libxcb-1.13.1 =x11-libs/xcb-util-image-0.4.0-r1 =x11-libs/xcb-util-keysyms-0.4.0-r1 =x11-libs/xcb-util-renderutil-0.3.9-r2 =x11-libs/xcb-util-wm-0.4.1-r2 =sys-kernel/linux-headers-4.19 =dev-lang/perl-5.26.2 =virtual/pkgconfig-0-r1 =dev-qt/qttest-5.11.1 =app-i18n/ibus-1.5.19 =dev-qt/qtchooser-0_p20170803 These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] dev-qt/qtchooser-0_p20170803::gentoo USE="-test" 32 KiB [ebuild R ] virtual/pkgconfig-0-r1::gentoo ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] virtual/jpeg-0-r2::gentoo USE="-static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] virtual/libudev-232:0/1::gentoo USE="-static-libs (-systemd)" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] virtual/opengl-7.0-r2::gentoo ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/libdrm-2.4.96::gentoo USE="-libkms -valgrind" ABI_X86="32 (64) (-x32)" VIDEO_CARDS="intel -amdgpu (-exynos) (-freedreno) -nouveau (-omap) -radeon (-tegra) (-vc4) (-vivante) -vmware" 0 KiB [ebuild R ] sys-libs/zlib-1.2.11-r2:0/1::gentoo USE="minizip -static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/libxcb-1.13.1:0/1.12::gentoo USE="(selinux) xkb -doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/libICE-1.0.9-r2::gentoo USE="ipv6 -doc -static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild N ] x11-libs/tslib-1.0-r3::gentoo ABI_X86="32 (64) (-x32)" 53 KiB [ebuild R ] dev-lang/perl-5.26.2:0/5.26::gentoo USE="berkdb gdbm ithreads -debug -doc" 0 KiB [ebuild R ] x11-libs/libX11-1.6.7::gentoo USE="ipv6 -doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild U ] media-libs/libpng-1.6.35-r1:0/16::gentoo [1.6.35:0/16::gentoo] USE="apng (-neon) -static-libs" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="sse" 1001 KiB [ebuild R ] x11-libs/libSM-1.2.3::gentoo USE="ipv6 uuid -doc -static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/libxkbcommon-0.8.2::gentoo USE="X -doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/xcb-util-keysyms-0.4.0-r1::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/xcb-util-image-0.4.0-r1::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/xcb-util-renderutil-0.3.9-r2::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] x11-libs/xcb-util-wm-0.4.1-r2::gentoo USE="-doc -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] media-libs/freetype-2.9.1-r4:2::gentoo USE="X adobe-cff bzip2 cleartype_hinting fontforge infinality png -bindist -debug -doc -harfbuzz -static-libs -utils" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] media-libs/mesa-18.3.0_rc3::gentoo USE="classic dri3 egl gallium gbm gles2 llvm lm_sensors (selinux) vaapi vdpau wayland -d3d9 -debug -gles1 -opencl -osmesa -pax_kernel -pic -test -unwind -valgrind -vulkan -xa -xvmc" ABI_X86="32 (64) (-x32)" VIDEO_CARDS="i915 i965 intel (-freedreno) (-imx) -nouveau -r100 -r200 -r300 -r600 -radeon -radeonsi (-vc4) -virgl (-vivante) -vmware" 0 KiB [ebuild R ] x11-libs/libXi-1.7.9-r1::gentoo USE="-doc -static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] sys-kernel/linux-headers-4.19::gentoo USE="-headers-only" 0 KiB [ebuild R ] dev-libs/glib-2.56.2:2::gentoo USE="dbus mime (selinux) xattr -debug (-fam) -static-libs -systemtap -test -utils" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] media-libs/fontconfig-2.13.1-r2:1.0::gentoo USE="-doc -static-libs" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] sys-libs/mtdev-1.1.5::gentoo USE="-static-libs" 268 KiB [ebuild R ] dev-qt/qtcore-5.11.1-r1:5/5.11::gentoo USE="icu -debug (-systemd) -test" 0 KiB [ebuild R ] media-libs/harfbuzz-2.1.3:0/0.9.18::gentoo USE="cairo fontconfig glib graphite icu introspection truetype -debug -static-libs -test" ABI_X86="32 (64) (-x32)" 0 KiB [ebuild R ] dev-libs/libinput-1.12.3:0/10::gentoo USE="-doc" INPUT_DEVICES="-wacom" 0 KiB [ebuild R ] dev-qt/qtdbus-5.11.1:5/5.11::gentoo USE="-debug -test" 0 KiB [ebuild R ] dev-qt/qttest-5.11.1:5/5.11::gentoo USE="-debug -test" 0 KiB [ebuild U ] app-i18n/ibus-1.5.19::gentoo [1.5.18::gentoo] USE="X emoji gtk gtk2 introspection libnotify nls python unicode wayland -gconf -kde -test -vala" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6" 2776 KiB [ebuild R ] dev-qt/qtnetwork-5.11.1:5/5.11::gentoo USE="libproxy networkmanager ssl -bindist -connman -debug -test" 0 KiB Total: 33 packages (2 upgrades, 1 new, 30 reinstalls), Size of downloads: 4129 KiB
All the deps were build successfully BUT we still got the error!!!
We tried strace to see where the compilation was looking for the stdlib.h file:
srv.local ~ # strace -o ./qtgui.strace.log -s 256 -f ebuild /usr/portage/dev-qt/qtgui/qtgui-5.11.1.ebuild compile
srv.local ~ # grep stdlib.h qtgui-5.11.1.log
13370 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/x86_64-pc-linux-gnu/stdlib.h", 0x7ffe437bf040) = -1 ENOENT (No such file or directory)
13370 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/x86_64-pc-linux-gnu/stdlib.h", 0x7ffe437bdfe0) = -1 ENOENT (No such file or directory)
13370 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/backward/stdlib.h", 0x7ffe437bf040) = -1 ENOENT (No such file or directory)
13370 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/backward/stdlib.h", 0x7ffe437bdfe0) = -1 ENOENT (No such file or directory)
13370 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/stdlib.h", 0x7ffe437bf040) = -1 ENOENT (No such file or directory)
13370 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/stdlib.h", 0x7ffe437bdfe0) = -1 ENOENT (No such file or directory)
13370 lstat("/usr/local/include/stdlib.h", 0x7ffe437bf040) = -1 ENOENT (No such file or directory)
13370 stat("/usr/local/include/stdlib.h", 0x7ffe437bdfe0) = -1 ENOENT (No such file or directory)
13370 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include-fixed/stdlib.h", <unfinished ...>
13370 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include-fixed/stdlib.h", <unfinished ...>
13373 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/x86_64-pc-linux-gnu/stdlib.h", 0x7ffc28a9b6b0) = -1 ENOENT (No such file or directory)
13373 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/x86_64-pc-linux-gnu/stdlib.h", 0x7ffc28a9a650) = -1 ENOENT (No such file or directory)
13373 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/backward/stdlib.h", 0x7ffc28a9b6b0) = -1 ENOENT (No such file or directory)
13373 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/backward/stdlib.h", 0x7ffc28a9a650) = -1 ENOENT (No such file or directory)
13373 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include/stdlib.h", 0x7ffc28a9b6b0) = -1 ENOENT (No such file or directory)
13373 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/stdlib.h", 0x7ffc28a9a650) = -1 ENOENT (No such file or directory)
13373 lstat("/usr/local/include/stdlib.h", 0x7ffc28a9b6b0) = -1 ENOENT (No such file or directory)
13373 stat("/usr/local/include/stdlib.h", 0x7ffc28a9a650) = -1 ENOENT (No such file or directory)
13373 lstat("/usr/lib64/gcc/x86_64-pc-linux-gnu/8.2.0/include-fixed/stdlib.h", 0x7ffc28a9b6b0) = -1 ENOENT (No such file or directory)
13373 stat("/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include-fixed/stdlib.h", 0x7ffc28a9a650) = -1 ENOENT (No such file or directory)
So the file “stdlib.h” is not found and is not searched in the directory where it is located (above there is search example)
/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/tr1/stdlib.h /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/stdlib.h
We even recompile all world packages with:
eix -u --only-names|sort|uniq|grep -v kde|while read one; do emerge -v "$one"; emerge -v --nodeps =dev-qt/qtwidgets-5.11.1; rm -R /var/tmp/portage/*;done
So rebuilding all packages and after each package we tried to rebuild the “=dev-qt/qtwidgets-5.11.1” (don’t ask, just we have a really fast and multi processors and cores idling machine ) and after the last package we still got the same error! Then someone found this mega (mega because look how many dependency it has – 27 other bugs depend on it) bug report https://bugs.gentoo.org/666134 (look at the end of this article if this URL does not work any more) and YES our
GLIBC was 2.28!
Meanwhile there was a newer glibc 2.28-r5 (which includes some of the bug fixes) and a newer gcc-8.2.0-r6. So we rebuilt the linux-headers, then glibc and the last GCC (this order is important -> linux-headers -> glibc -> gcc):
srv.local # emerge -vu linux-headers These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] sys-kernel/linux-headers-4.20::gentoo [4.19::gentoo] USE="-headers-only" 7858 KiB Total: 1 package (1 upgrade), Size of downloads: 7858 KiB >>> Verifying ebuild manifests * gentoo-headers-4.20-1.tar.xz BLAKE2B SHA512 size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking gentoo-headers-base-4.20.tar.xz to /var/tmp/portage/sys-kernel/linux-headers-4.20/work >>> Unpacking gentoo-headers-4.20-1.tar.xz to /var/tmp/portage/sys-kernel/linux-headers-4.20/work >>> Source unpacked in /var/tmp/portage/sys-kernel/linux-headers-4.20/work >>> Preparing source in /var/tmp/portage/sys-kernel/linux-headers-4.20/work/gentoo-headers-base-4.20 ... * Applying 00_all_0001-linux-stat.h-remove-__GLIBC__-checks.patch ... [ ok ] * Applying 00_all_0002-netfilter-pull-in-limits.h.patch ... [ ok ] * Applying 00_all_0003-convert-PAGE_SIZE-usage.patch ... [ ok ] * Applying 00_all_0004-asm-generic-fcntl.h-namespace-kernel-file-structs.patch ... [ ok ] * Applying 00_all_0005-unifdef-drop-unused-errno.h-include.patch ... [ ok ] * Applying 00_all_0006-x86-do-not-build-relocs-tool-when-installing-headers.patch ... [ ok ] * Applying 00_all_0007-netlink-drop-int-cast-on-length-arg-in-NLMSG_OK.patch ... [ ok ] * Applying 00_all_0008-uapi-fix-System-V-buf-header-includes.patch ... [ ok ] >>> Source prepared. ..... ..... srv.local # emerge -vu glibc These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] sys-libs/glibc-2.28-r5:2.2::gentoo [2.28-r2:2.2::gentoo] USE="audit gd multiarch (multilib) (selinux) suid -caps (-cet) (-compile-locales) -doc -headers-only -nscd -profile -systemtap -test (-vanilla) (-hardened%)" 0 KiB Total: 1 package (1 upgrade), Size of downloads: 0 KiB >>> Verifying ebuild manifests >>> Running pre-merge checks for sys-libs/glibc-2.28-r5 * Checking general environment sanity. make -j5 -s glibc-test * Checking that IA32 emulation is enabled in the running kernel ... [ ok ] * Checking gcc for __thread support ... [ ok ] * Checking running kernel version (4.19.0-gentoo >= 3.2.0) ... [ ok ] * Checking linux-headers version (4.20.0 >= 3.2.0) ... [ ok ] >>> Emerging (1 of 1) sys-libs/glibc-2.28-r5::gentoo * glibc-2.28.tar.xz BLAKE2B SHA512 size ;-) ... [ ok ] * glibc-2.28-patches-8.tar.xz BLAKE2B SHA512 size ;-) ... [ ok ] * gcc-multilib-bootstrap-20180511.tar.xz BLAKE2B SHA512 size ;-) ... [ ok ] >>> Unpacking source... ..... ..... srv.local # emerge -v gcc These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] sys-devel/gcc-8.2.0-r6:8.2.0::gentoo [8.2.0-r5:8.2.0::gentoo] USE="cxx fortran (multilib) nls nptl openmp pch (pie) sanitize ssp vtv (-altivec) -debug -doc (-fixed-point) -go -graphite -hardened (-jit) (-libssp) -mpx -objc -objc++ -objc-gc -pgo -regression-test -systemtap -vanilla" 18 KiB Total: 1 package (1 upgrade), Size of downloads: 18 KiB >>> Recording sys-devel/gcc in "world" favorites file... >>> Verifying ebuild manifests >>> Running pre-merge checks for sys-devel/gcc-8.2.0-r6 >>> Emerging (1 of 1) sys-devel/gcc-8.2.0-r6::gentoo * gcc-8.2.0.tar.xz BLAKE2B SHA512 size ;-) ... ..... .....
Then we tried again with “dev-qt/qtcore-5.11.1-r1” (because we were stuck with this QT version all other packages were this version and we wanted to know if there is still this bug) with NO SUCCESS
This time another error
/usr/include/linux/stat.h:18:8: error: redefinition of ‘struct statx_timestamp’
This is one of the bugs, which glibc mega bug depends on (the https://bugs.gentoo.org/666134 look at the end of this article if this URL does not work any more)
srv.local # emerge -va --nodeps =dev-qt/qtcore-5.11.1-r1
These are the packages that would be merged, in order:
[ebuild R ] dev-qt/qtcore-5.11.1-r1:5/5.11::gentoo USE="icu -debug (-systemd) -test" 0 KiB
Total: 1 package (1 reinstall), Size of downloads: 0 KiB
Would you like to merge these packages? [Yes/No] yes
>>> Verifying ebuild manifests
>>> Emerging (1 of 1) dev-qt/qtcore-5.11.1-r1::gentoo
* qtbase-everywhere-src-5.11.1.tar.xz BLAKE2B SHA512 size ;-) ... [ ok ]
>>> Unpacking source...
x86_64-pc-linux-gnu-g++ -c -o qlibraryinfo.o -march=haswell -O2 -fomit-frame-pointer -pipe -std=c++11 -ffunction-sections -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake/library -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake/generators -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake/generators/unix -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake/generators/win32 -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/qmake/generators/mac -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/5.11.1 -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/5.11.1/QtCore -I../src/corelib/global -I/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/mkspecs/linux-g++ -DQT_VERSION_STR="5.11.1" -DQT_VERSION_MAJOR=5 -DQT_VERSION_MINOR=11 -DQT_VERSION_PATCH=1 -DQT_BUILD_QMAKE -DQT_BOOTSTRAPPED -DPROEVALUATOR_FULL -DQT_NO_FOREACH -DQT_BUILD_QMAKE_BOOTSTRAP /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/global/qlibraryinfo.cpp
In file included from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:94:
/usr/include/linux/stat.h:18:8: error: redefinition of 'struct statx_timestamp'
struct statx_timestamp {
^~~~~~~~~~~~~~~
In file included from /usr/include/sys/stat.h:446,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/mkspecs/linux-g++/qplatformdefs.h:75,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:42:
/usr/include/bits/statx.h:25:8: note: previous definition of 'struct statx_timestamp'
struct statx_timestamp
^~~~~~~~~~~~~~~
In file included from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:94:
/usr/include/linux/stat.h:61:8: error: redefinition of 'struct statx'
struct statx {
^~~~~
In file included from /usr/include/sys/stat.h:446,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/mkspecs/linux-g++/qplatformdefs.h:75,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:42:
/usr/include/bits/statx.h:36:8: note: previous definition of 'struct statx'
struct statx
^~~~~
/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:110:12: error: 'int renameat2(int, const char*, int, const char*, unsigned int)' was declared 'extern' and later 'static' [-fpermissive]
static int renameat2(int oldfd, const char *oldpath, int newfd, const char *newpath, unsigned flags)
^~~~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/cstdio:42,
from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/ext/string_conversions.h:43,
from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/bits/basic_string.h:6391,
from /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include/g++-v8/string:52,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/../../src/corelib/tools/qbytearray.h:52,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/qbytearray.h:1,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/../../src/corelib/tools/qstring.h:49,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/qstring.h:1,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/../../src/corelib/io/qiodevice.h:50,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/qiodevice.h:1,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/../../src/corelib/io/qfiledevice.h:43,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/include/QtCore/qfiledevice.h:1,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfile.h:44,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_p.h:54,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:43:
/usr/include/stdio.h:164:12: note: previous declaration of 'int renameat2(int, const char*, int, const char*, unsigned int)'
extern int renameat2 (int __oldfd, const char *__old, int __newfd,
^~~~~~~~~
/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:115:12: error: 'int statx(int, const char*, int, unsigned int, statx*)' was declared 'extern' and later 'static' [-fpermissive]
static int statx(int dirfd, const char *pathname, int flag, unsigned mask, struct statx *statxbuf)
^~~~~
In file included from /usr/include/sys/stat.h:446,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/mkspecs/linux-g++/qplatformdefs.h:75,
from /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp:42:
/usr/include/bits/statx.h:87:5: note: previous declaration of 'int statx(int, const char*, int, unsigned int, statx*)'
int statx (int __dirfd, const char *__restrict __path, int __flags,
^~~~~
distcc[1030] ERROR: compile /var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1/src/corelib/io/qfilesystemengine_unix.cpp on localhost failed
gmake: *** [Makefile:422: qfilesystemengine_unix.o] Error 1
gmake: *** Waiting for unfinished jobs....
* ERROR: dev-qt/qtcore-5.11.1-r1::gentoo failed (configure phase):
* configure failed
*
* Call stack:
* ebuild.sh, line 124: Called src_configure
* environment, line 2799: Called qt5-build_src_configure
* environment, line 2367: Called qt5_base_configure
* environment, line 2476: Called die
* The specific snippet of code:
* "${S}"/configure "${conf[@]}" || die "configure failed";
*
* If you need support, post the output of `emerge --info '=dev-qt/qtcore-5.11.1-r1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=dev-qt/qtcore-5.11.1-r1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/temp/environment'.
* Working directory: '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1'
* S: '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1'
>>> Failed to emerge dev-qt/qtcore-5.11.1-r1, Log file:
>>> '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/temp/build.log'
* Messages for package dev-qt/qtcore-5.11.1-r1:
* ERROR: dev-qt/qtcore-5.11.1-r1::gentoo failed (configure phase):
* configure failed
*
* Call stack:
* ebuild.sh, line 124: Called src_configure
* environment, line 2799: Called qt5-build_src_configure
* environment, line 2367: Called qt5_base_configure
* environment, line 2476: Called die
* The specific snippet of code:
* "${S}"/configure "${conf[@]}" || die "configure failed";
*
* If you need support, post the output of `emerge --info '=dev-qt/qtcore-5.11.1-r1::gentoo'`,
* the complete build log and the output of `emerge -pqv '=dev-qt/qtcore-5.11.1-r1::gentoo'`.
* The complete build log is located at '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/temp/environment'.
* Working directory: '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1'
* S: '/var/tmp/portage/dev-qt/qtcore-5.11.1-r1/work/qtbase-everywhere-src-5.11.1'
So the solution was to use the patch version of qtcore-5.11.3-r2 (and so to upgrade all the QT packages) to version 5.11.3
Bonus 3
Here is the https://bugs.gentoo.org/663916
Title: Bug 663916 (glibc-2.28) – [TRACKER] Issues with sys-libs/glibc-2.28 (directly and indirectly)
Depends on:
Bug 146882 – sys-libs/glibc locale generation should be done in src_*() instead of pkg_postinst()
Bug 669206 – app-arch/freeze-2.5.0-r1 : freeze.h:20:33: error: FILE {aka struct _IO_FILE } has no member named _cnt
Bug 669338 – dev-libs/libprelude-4.1.0 : fseeko.c:110:4: error: #error Please port gnulib fseeko.c to your platform! Look at the code in fseeko.c, then report this to bug-gnulib.
Bug 669452 – net-misc/dhcpd-pools-2.21 : fseeko.c:103:4: error: #error Please port gnulib fseeko.c to your platform! Look at the code in fpurge.c, then report this to bug-gnulib.
Bug 669606 – net-p2p/gtk-gnutella-1.1.14 : stats.c:53:8: error: redefinition of struct statx
Bug 669676 – dev-util/idutils-4.6 : fseterr.c:74:3: error: #error Please port gnulib fseterr.c to your platform! Look at the definitions of ferror and clearerr on your system, then report this to bug-gnulib.
Bug 669686 – games-action/atanks-6.4-r1 : /…/mathcalls-narrow.h:24:20: error: conflicting declaration of C function float fadd(double, double)
Bug 669742 – sci-mathematics/pspp-0.10.2 : fseterr.c:78:3: error: #error Please port gnulib fseterr.c to your platform! Look at the definitions of ferror and clearerr on your system, then report this to bug-gnulib.
Bug 670781 – dev-games/aseprite-1.1.7 : /…/alcompat.h:44:7: error: conflicting declaration of C function fixed fadd(fixed, fixed)
Bug 657404 – sys-libs/glibc-2.27-r3 : file collision with sys-auth/libnss-compat-1.2
Bug 662776 – =sys-apps/systemd-239-r1 fails to build against glibc-2.28: error: redefinition of ‘struct statx_timestamp’
Bug 663242 – sys-apps/findutils fails to build with sys-libs/glibc-2.28
Bug 663924 – =sys-devel/m4-1.4.18: build failure against glibc-2.28: fseeko.c:110:4: error: #error “Please port gnulib fseeko.c to your platform! Look at the code in fseeko.c, then report this to bug-gnulib.”
Bug 663928 – =app-arch/gzip-1.9: build failure against gcc-8/glibc-2.28: cc1: error: -Wabi won’t warn about anything [-Werror=abi]
Bug 663930 – =sys-fs/reiserfsprogs-3.6.27: build failure against glibc-2.28: ../include/misc.h:76:26: error: unknown type name ‘loff_t’; did you mean ‘off_t’?
Bug 664750 – net-dialup/ppp-2.4.7-r6 with sys-libs/glibc-2.28 – pppcrypt.c: undefined reference to `setkey’
Bug 666134 – =sys-libs/glibc-2.28: error: redefinition of ‘struct statx_timestamp’
Bug 666202 – net-mail/dovecot-2.3.2.1 crashes when built with glibc-2.28
Bug 669330 – dev-lang/icon-9.5.1-r1 : fpoll.c:67:9: error: FILE {aka struct _IO_FILE } has no member named _bufp
Bug 669332 – app-misc/ckermit-8.0.211-r4 : ckucmd.c:7118:48: error: FILE {aka struct _IO_FILE } has no member named _cnt
Bug 669334 – app-misc/gcal-4.1 : fseeko.c:110:4: error: #error Please port gnulib fseeko.c to your platform! Look at the code in fseeko.c, then report this to bug-gnulib.
Bug 669336 – sys-auth/oath-toolkit-2.6.2 : fseeko.c:110:4: error: #error Please port gnulib fseeko.c to your platform! Look at the code in fseeko.c, then report this to bug-gnulib.
Bug 669560 – sys-apps/systemd-239-r1 with sys-libs/glibc-2.28 – In file included from ../systemd-239/src/libsystemd/sd-resolve/sd-resolve.c:20: /usr/include/linux/stat.h:18:8: error: redefinition of ‘struct statx_timestamp’
Bug 669594 – app-arch/lbzip2-2.5 : /…/fseterr.c:77:3: error: #error Please port gnulib fseterr.c to your platform! Look at the definitions of ferror and clearerr on your system, then report this to bug-gnulib.
Bug 669694 – app-admin/metalog-3-r2 : fseterr.c:77:3: error: #error Please port gnulib fseterr.c to your platform! Look at the definitions of ferror and clearerr on your system, then report this to bug-gnulib.
Bug 669846 – sys-boot/systemd-boot-239 : /…/stat.h:18:8: error: redefinition of struct statx_timestamp
Bug 671856 – =sys-fs/udev-239 fails to build against glibc-2.28: error: redefinition of ‘struct statx_timestamp’